ToolFinder

This page lists bioinformatics tools and software that are installed across several of the BioCommons infrastructure partner systems. Tool / software status on other infrastructure partner systems will be added over time.

Can’t find the software you need? Click here to see other options for finding software

BioContainers registry: discover and access containers for software tools
Galaxy toolshed: discover tools which can be requested for installation on Galaxy Australia
Dockstore tool search: discover containers for single tools

Click to find out how to request installation of software on ToolFinder listed infrastructures

Infrastructure	Process
Galaxy Australia	Complete a tool install request
NCI	Contact NCI
Pawsey	Visit the Helpdesk Portal or email: help@pawsey.org.au with your request
QRIScloud / UQ-RCC	Complete a tool install request

Please note:

NCI (if89) below refers to the Australian BioCommons Tools and Workflows repository, located in project allocation if89 at the National Computational Infrastructure (NCI).

Note:

Table last updated 2024-04-12.
The Tool identifier column (hidden by default) contains an identifier for the tool / workflow: typically the module name (used for matching to HPC lists).
The Topic(s) column categorises the tools by purpose, using an EDAM term where possible.
More information about a tool can be found by following the [bio.tools links](https://bio.tools/).
When a tool has been containerised to allow for easier installation on any compute infrastructure, a link to the containerised software that can be downloaded from BioContainers is shown in the Containers available? (BioContainers) column.
The source material for the table is currently manually curated, and while we endeavour to keep the information as current as possible, there is a natural limit to the volume of information maintained here. Production of this information will be automated over time, and tools that are not relevant for bioinformatics analyses removed.

How was the list generated?

Please see the GitHub repository for more details.