| AlternativeTo - version control |
Resource page that helps you select a suitable version control system (VCS).
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Have publicly accessib... |
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| Australian BioCommons documentation guidelines |
A set of guidelines for documenting bioinformatics tools and workflows.
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State purpose, functio... |
User guide
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| Awesome Research Software Registries list |
A list of research software registries maintained by the Netherlands eScience Center (NLeSC).
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Register |
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| BEDTools |
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Give your tool or work... |
bio.tools
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| bio-cwl-tools |
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State purpose, functio... |
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| bio.tools |
Metadata about bioinformatics software, databases and data services.
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Give your tool or work...
State purpose, functio...
Register |
FAIRsharing
Documentation or Guide
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| BIOCONDA |
|
Register |
bio.tools
|
| Bioconductor |
Packages for software, annotations, data, workflows etc. Mainly written in R.
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Register
Join or align with a c... |
FAIRsharing
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| BioContainers |
An infrastructure that provides guidelines and processes to support the creation, management and distribution of bioinformatics containers.
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Register
Join or align with a c... |
bio.tools
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| BioImage Informatics Index |
|
Register |
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| BioJS |
Open-source library of JavaScript components to visualise biological data.
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Register |
bio.tools
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| BitBucket |
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Have publicly accessib... |
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| Choose an open source license |
Online resource that helps you to choose a suitable open source license.
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Select a suitable licence |
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| Citation file format |
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State purpose, functio...
Include clear citation... |
Wizard
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| Codemeta |
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State purpose, functio...
Include clear citation... |
Wizard
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| CRAN |
The Comprehensive R Archive Network.
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Cite other tools and w... |
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| CWL |
Common Workflow Language (CWL).
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Join or align with a c... |
Community
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| Dockstore |
A free and open source registry / platform that supports the sharing of both tools and workflows.
|
Register |
bio.tools
Documentation or Guide
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| EDAM |
An ontology covering Topics, Operations, Data and Formats within research.
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State purpose, functio... |
Training (TeSS)
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| EDAM-Browser |
An interactive browser and search tool for the EDAM ontology.
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State purpose, functio... |
bio.tools
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| FAIRsharing |
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State purpose, functio...
Register |
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| FAIRsoft Evaluator |
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State purpose, functio... |
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| FASTQC |
|
Give your tool or work... |
bio.tools
|
| Galaxy Project |
|
Have an ORCID
Join or align with a c... |
bio.tools
Training
|
| Galaxy Proteomics (Galaxy-P) |
A community focused on the use of Galaxy for proteomics.
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Join or align with a c... |
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| GitHub |
Platform for collaborative development and version control using git.
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Have publicly accessib...
Generate and use digit...
Cite other tools and w... |
Training (TeSS)
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| GitLab |
Platform for collaborative development and version control using git.
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Have publicly accessib... |
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| HiFiAdapterFilt |
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Give your tool or work... |
bio.tools
|
| Intergalactic Utilities Commission (IUC) |
A community effort to create, test and share high quality Galaxy tool wrappers.
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Join or align with a c... |
Documentation or Guide
|
| Intergalactic Workflows Commission (IWC) |
A community effort to create, test and share high quality Galaxy workflows.
|
Have publicly accessib...
Join or align with a c... |
|
| microGalaxy community |
A community focused on the use of Galaxy for microbial data analysis.
|
Join or align with a c... |
|
| Nextflow |
Workflow management system.
|
Join or align with a c... |
Community
|
| nf-core |
Community effort focused on developing Nextflow workflows.
|
Select a suitable licence
Join or align with a c... |
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| nf-core/rnaseq |
A nf-core RNAseq workflow.
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State purpose, functio... |
DOI
|
| ORCID |
Organisation that provides ORCID iDs - persistent and unique identifiers for researchers.
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Have an ORCID |
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| PacBio HiFi genome assembly using hifiasm |
Galaxy workflow for de novo genome assembly based on reads built from PacBio circular consensus sequence high fidelity (HiFi) reads.
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State purpose, functio... |
WorkflowHub entry
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| Pokemon or big data? |
Can you work out which names are from Pokemon, and which are from Big Data?
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Give your tool or work... |
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| Python |
Python programming language.
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Join or align with a c... |
Community
|
| R |
R programming language.
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Join or align with a c... |
bio.tools
|
| re3data |
|
Register |
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| readme.so |
Create custom README.md files for your repository.
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State purpose, functio... |
Wizard
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| SAMtools |
|
Give your tool or work... |
bio.tools
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| SciCrunch |
Metadata about records such as software, databases, projects and services.
|
Register |
FAIRsharing
|
| Snakemake |
Workflow management system.
|
Select a suitable licence
Join or align with a c... |
Community
|
| Software Heritage |
|
Register |
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| SoftwareCarpentry - git novice |
A git novice lesson from Software Carpentry.
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Have publicly accessib... |
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| tl;drLegal |
Clear summaries of software licenses.
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Select a suitable licence |
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| WorkflowHub |
A free and open source registry that supports the description, sharing and publication of scientific computational workflows.
|
Give your tool or work...
State purpose, functio...
Register
Have an ORCID
Generate and use digit...
Cite other tools and w... |
bio.tools
Documentation or Guide
|
| Zenodo |
An open science focused repository for sharing documents, data and software.
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Generate and use digit... |
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