Project title
Recovery of novel microbial genomes with Bin Chicken
Collaborators and funding
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Woodcroft group, Centre for Microbiome Research, Queensland University of Technology
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EMERGE Biology Integration Institute, National Science Foundation, United States
Contact(s)
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Samuel Aroney, QUT, samuel.aroney@qut.edu.au
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Ben Woodcroft, QUT, b.woodcroft@qut.edu.au
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Yibi Chen, QUT, yibi.chen@qut.edu.au
Project description and aims
Despite large-scale genome recovery efforts, most microbial species lack a reference genome. We aim to produce novel microbial reference genomes from public metagenomes via new techniques. To this end we have created Bin Chicken, a tool that predicts the best samples to combine for coassembly, allowing recovery of novel genomes.
How is ABLeS supporting this work?
This work is supported through the reference data generation scheme provided by ABLeS. The supports includes 5 TB long term storage and 100 KSUs per quarter.
Expected outputs enabled by participation in ABLeS
Microbial genomes linked to SRA metadata will be made available on a public database such as NCBI. Biogeography of newly recovered species will be published in a research article and on the Sandpiper website. Publication of results (both direct and downstream) in academic journals. In each case, the ABLeS scheme will be acknowledged.
These details have been provided by project members at project initiation. For more information on the project, please consult the contact(s) or project links above.