This resource presents step-by-step guides and other associated documentation that support the reuse of bioinformatics tools, workflows and data on Australian compute systems and infrastructure.
Genome assembly
It is important to assess the quality of a genome assembly, and in the first instance, this quality control (QC) can be achieved using the workflow described here
This guide describes the steps required to assemble your genome on the Galaxy Australia platform using multiple workflows
Population genomics
This guide describes the steps required to run multiple Stacks workflows on Galaxy Australia to analyse RADseq data.
Contributors
These guides would not be possible without the following contributors.
Anna Syme
Bert Droesbeke
Gareth Price
QCIF Bioinformatics, University of Queensland
Jo Day
Taronga Conservation Society Australia
Editor
Johan Gustafsson
Australian BioCommons / University of Melbourne
Kate Farquharson
University of Sydney (School of Life and Environmental Sciences) and ARC Centre of Excellence for Innovations in Peptide and Protein Science
Simon Tang
Tom Harrop
Wai Cheng (Mike) Thang
QCIF Bioinformatics, University of Queensland
Acknowledgements
This work is supported by the Australian BioCommons via funding from Bioplatforms Australia, the Australian Research Data Commons (https://doi.org/10.47486/PL105) and the Queensland Government RICF programme. Bioplatforms Australia and the Australian Research Data Commons are funded by the National Collaborative Research Infrastructure Strategy (NCRIS).
This repository makes use of the ELIXIR toolkit theme:
