| Assess the quality of your genome assembly |
Once a genome has been assembled, it is important to assess the quality of the assembly, and in the first instance, this quality control (QC) can be achieved using the workflow described here.
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Genome assembly |
Training (TeSS)
WorkflowHub entry
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| Genome assembly with `hifiasm` on Galaxy Australia |
This How-to-Guide describes the steps required to assemble your genome on the Galaxy Australia platform, using multiple workflows developed in consultation between the Bioplatforms Australia Threatened Species Initiative, Galaxy Australia, and the Australian BioCommons.
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Genome assembly |
Training (TeSS)
WorkflowHub collection
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| How-to Guide for creating a How-to Guide |
This web page describes How-to create new How-to Guide websites using a GitHub repository template.
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Documentation |
DOI
Template
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| How-to use the Australian BioCommons documentation guidelines |
The Australian BioCommons has been working with community bioinformaticians and our infrastructure partners to establish a guidelines repository that can act as a template for documentation of tools and workflows.
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Documentation |
Template
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| scRNAseq Processing Workflows on Galaxy Australia |
This guide describes how to use some scanpy-based single cell RNAseq workflows on Galaxy Australia.
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| Shotgun metagenomics workflow with MetaPhlAn2 on Galaxy Australia |
This How-to Guide describes how to use the shotgun metagenomics workflow with MetaPhlAn2 on Galaxy Australia. The workflow is using the tools MetaPhlAn2 for taxonomy classification and HUMAnN2 for functional profiling of the metagenomes.
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Metagenomics |
bio.tools
WorkflowHub entry
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| Stacks workflows in Galaxy Australia using RADseq |
This How-to Guide describes the steps required to run the Stacks workflows on Galaxy Australia to analyse RADseq data, using workflows developed in consultations between the Bioplatforms Australia Threatened Species Initiative, Galaxy Australia, and the Australian BioCommons.
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Population genomics |
bio.tools
Training (TeSS)
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