| AlphaFold2 How-to Guide |
Covers the basics including running a structure prediction, and interpreting outputs files
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Computational structur... |
bio.tools
Training (TeSS)
DOI
|
| Assess the quality of your genome assembly |
Once a genome has been assembled, it is important to assess the quality of the assembly, and in the first instance, this quality control (QC) can be achieved using the workflow described here.
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Genome assembly |
Training (TeSS)
WorkflowHub entry
|
| Best practices for presenting and sharing AlphaFold models in a paper |
A guide for presenting and sharing AlphaFold models in papers.
|
Computational structur... |
bio.tools
Training (TeSS)
DOI
|
| Genome Annotation |
How-to Guide for Genome Annotation with FgenesH++.
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Genome annotation |
bio.tools
WorkflowHub collection
WorkflowHub entry
|
| Genome assembly with `hifiasm` on Galaxy Australia |
This How-to-Guide describes the steps required to assemble your genome on the Galaxy Australia platform, using multiple workflows developed in consultation between the Bioplatforms Australia Threatened Species Initiative, Galaxy Australia, and the Australian BioCommons.
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Genome assembly |
Training (TeSS)
WorkflowHub collection
|
| Genome scaffolding with Hi-C on Galaxy Australia |
This guide describes the steps required to scaffold your genome on the Galaxy Australia platform using HiC data.
|
Genome assembly |
Training (TeSS)
WorkflowHub entry
|
| How-to Guide for creating a How-to Guide |
This web page describes How-to create new How-to Guide websites using a GitHub repository template.
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Documentation |
DOI
Template
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| How-to use the Australian BioCommons documentation guidelines |
The Australian BioCommons has been working with community bioinformaticians and our infrastructure partners to establish a guidelines repository that can act as a template for documentation of tools and workflows.
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Documentation |
Template
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| ONTViSc pipeline on HPC using Australian Nextflow Seqera Service |
This is a guide outlining how to set up and execute the ONTViSc pipeline on three high-performance computing systems hosted by Australian research and computing facilities - Lyra (Queensland University of Technology), Gadi (National Computational Infrastructure) and Setonix (Pawsey Supercomputing Research Centre). Throughout this guide we make use of the Australian Nextflow Seqera Service provided to researchers by Australian BioCommons.
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Metagenomics |
WorkflowHub entry
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| scRNAseq Processing Workflows on Galaxy Australia |
This guide describes how to use some scanpy-based single cell RNAseq workflows on Galaxy Australia.
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Transcriptomics |
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| Shotgun metagenomics workflow with MetaPhlAn2 on Galaxy Australia |
This How-to Guide describes how to use the shotgun metagenomics workflow with MetaPhlAn2 on Galaxy Australia. The workflow is using the tools MetaPhlAn2 for taxonomy classification and HUMAnN2 for functional profiling of the metagenomes.
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Metagenomics |
bio.tools
WorkflowHub entry
|
| Stacks workflows in Galaxy Australia using RADseq |
This How-to Guide describes the steps required to run the Stacks workflows on Galaxy Australia to analyse RADseq data, using workflows developed in consultations between the Bioplatforms Australia Threatened Species Initiative, Galaxy Australia, and the Australian BioCommons.
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Population genomics |
bio.tools
Training (TeSS)
|
| Transcriptome Alignment |
How-to Guide for Transcriptome alignment.
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Genome annotation |
WorkflowHub collection
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